Multifarious injection chamber for molecular structure study (MICOSS) system: development and application for serial femtosecond crystallography at Pohang Accelerator Laboratory X‐ray Free‐Electron Laser

The multifarious injection chamber for molecular structure study (MICOSS) experimental system has been developed at the Pohang Accelerator Laboratory X‐ray Free‐Electron Laser for conducting serial femtosecond crystallography. This system comprises several instruments such as a dedicated sample chamber, sample injectors, sample environment diagnostic system and detector stage for convenient distance manipulation. Serial femtosecond crystallography experiments of lysozyme crystals have been conducted successfully. The diffraction peaks have reached to ～1.8 Å resolution at the photon energy of 9.785 keV.     

SDS-PAGE study on photooxidation damage of lysozyme induced by riboflavin

The photooxidation damage of lysozyme under 315-375 nm irradiation in the presence of riboflavin was studied by using sodium dodecyl sulfate-polyacrylamide gel electrophoresis(SDS-PAGE).Indica- tions showed that the mechanisms and products of oxidative damage were relative to the concentra- tion of riboflavin,the time of irradiation and the ambience.The type I process was examined in a nitrogen saturated solution,whereas both type I and type II were observed in an aerobic atmosphere and type II was the dominant process.The study also suggested that antioxidants,such as melatonin, can reduce the damage of lysozyme effectively.     

Three‐Component Langmuir–Blodgett Films Consisting of Surfactant,Clay Mineral,and Lysozyme: Construction and Characterization

The Langmuir–Blodgett (L–B) technique has been employed for the construction of hybrid films consisting of three components: surfactant, clay, and lysozyme (Lys). The surfactants are octadecylammonium chloride (ODAH) and octadecyl ester of rhodamine B (RhB18). The clays include saponite and laponite. Surface pressure versus area isotherms indicate that lysozyme is adsorbed by the surfactant–clay L–B film at the air–water interface without phase transition. The UV‐visible spectra of the hybrid film ODAH–saponite–Lys show that the amount of immobilized lysozyme in the hybrid film is (1.3±0.2) ng mm^?2. The average surface area (Ω) per molecule of lysozyme is approximately 18.2 nm² in the saponite layer. For the multilayer film (ODAH–saponite–Lys)_n, the average amount of lysozyme per layer is (1.0±0.1) ng mm^?2. The amount of lysozyme found in the hybrid films of ODAH–laponite–Lys is at the detection limit of about 0.4 ng mm^?2. Attenuated total reflectance (ATR) FTIR spectra give evidence for clay layers, ODAH, lysozyme, and water in the hybrid film. The octadecylammonium cations are partially oxidized to the corresponding carbamate. A weak 1620 cm^?1 band of lysozyme in the hybrid films is reminiscent of the presence of lysozyme aggregates. AFM reveals evidence of randomly oriented saponite layers of various sizes and shapes. Individual lysozyme molecules are not resolved, but aggregates of about 20 nm in diameter are clearly seen. Some aggregates are in contact with the clay mineral layers, others are not. These aggregates are aligned in films deposited at a surface pressure of 20 mN m^?1.     

A Bulk Acoustic Wave Viscosity Sensor for Determination of Lysozyme Based on Lysis of Micrococcus Lysodeikeicus

 A method for determination of lysozyme with a Bulk Acoustic Wave (BAW) viscosity sensor is presented. It is based on the bacteriolytic action of lysozyme on Micrococcus lysodeikeicus (M. lysodeikeicus) and the response of the sensor to the viscosity and density change of this process. There was a good correlation between the frequency shift and the concentration of lysozyme in the range 10–100 μg/ml. The content of lysozyme in human saliva was determined by this method and the results obtained were in good agreement with those from the conventional turbidimetric method. This method has an advantage over the conventional turbidimetric method in that the amount of sample needed is smaller, the procedure is simpler and the concentration range of the bacterium suspension which can be used in the detection was extended. Received September 11, 1998. Revision March 15, 1999.     

带正电荷蛋白在纳米/微米草酸钙晶体上的吸附特性及其与带负电荷蛋白吸附的比较

研究尺寸分别为100 nm和3μm的一水草酸钙(COM)和二水草酸钙(COD)晶体对带正电荷的蛋白溶菌酶(LSZ)的吸附差异,并与带负电荷的蛋白牛血清白蛋白(BSA)的吸附进行了比较。LSZ在纳米/微米COM和COD晶体上的吸附都很好的拟合了Langmuir模型,属于单分子层吸附。纳米/微米COM和COD对LSZ的最大吸附量顺序为COD-100 nmCOM-100 nmCOD-3μmCOM-3μm;晶体的比表面积越大,曲率越小,晶体表面所带电荷越负,晶体结晶水越多,均导致LSZ吸附量越大。体系离子强度和p H值亦影响LSZ的吸附。随着Na Cl浓度增加,LSZ的吸附量减小,说明Na+离子能与带正电荷的蛋白LSZ竞争晶体表面的吸附位点,导致晶体表面吸附LSZ的位点减少。晶体对LSZ的最大吸附量都出现在LSZ的等电点附近(p H=10.7);在p H=5~8(生理条件)时,LSZ的吸附量随p H值的增大而增大。本文结果提示,通过减小尿液的p H值或者适当增大尿液的离子强度,可以减小LSZ在尿微晶上的吸附量,有可能达到抑制草酸钙结石的效果。     

脲和盐酸胍诱导的卵清溶菌酶分子去折叠过程中各稳定构象态的分布和过渡

以内源荧光光谱和荧光相图法研究了脲和盐酸胍诱导的卵清溶菌酶分子的去折叠过程,结果表明,当变性液中脲和盐酸胍的浓度分别约为4.0和3.0 mol/L时,卵清溶菌酶分子的去折叠过程均存在一个折叠中间态,这两个去折叠过程均符合"三态模型".在卵清溶菌酶分子"三态"去折叠过程的基础上,通过变性剂分子和卵清溶菌酶分子之间的缔合一...     

Lysozyme coated DNA and DNA/SWNT fibers by solution spinning

DNA fibers were prepared by solution spinning of DNA in a lysozyme (LSZ) coagulation/gelation bath. Strong positive charges carried by LSZ protein condensed the DNA (strong negative charged) molecules resulting in self‐assembly and the formation of fibrillar structures in a gel‐like network. DNA/LSZ fibril formation was found to be dependent on the ratio of DNA to LSZ. A minimum 0.1 wt.‐% of LSZ was necessary to condense 0.1 wt.‐% of DNA into micro‐fibrils. Macroscopic fiber spinning was possible by introducing a 0.1 wt.‐% DNA aqueous solution into a 0.2 wt.‐% LSZ coagulation bath which resulted in fibers with ≈20 µm diameter. Single‐walled carbon nanotubes (SWNT) were also incorporated into these fibers to explore the possibility for creating hybrid materials. All DNA‐based fibers exhibit strong birefringence confirming molecular orientation along the fiber axis. Due to the presence of LSZ, the fibers exhibit antimicrobial activity against bacteria like Micrococcus lysodeikticus.

     

Triplet state sublevel spectroscopy applied to proteins

Triplet state sublevel spectroscopy using optical detection of magnetic resonance (ODMR) in zero magnetic field can be successfully employed to study (i) the environment of tryptophan (Trp) residues in a protein by observing the position and structure of phosphorescence spectra, zero field ODMR transitions and triplet state sublevel kinetics, (ii) the energy transfer among Trp residues, and (iii) whether any cysteine (Cys) residue is within van der Waals distance of any Trp residue by studying the complex of the protein with methylmercury(II) iodide (CH₃HgI) which binds to Cys residues. These studies are particularly important where crystal structure study is not possible. Study of the S₁ state often gives ambiguous results since fluorescence is always broad and shows multi-exponential decay. Our results on bacteriophage lysozyme T4 which contains three Trp residues at positions 126, 138 and 158 are presented. Measurements were facilitated by the use of a mutated enzyme containing one or two Trp-Tyr substitutions. The results indicate that (i) Trp 126 and 158 are solvent exposed, whereas Trp 138 is buried in a hydrophobic environment, (ii)S ↔S non-radiative energy transfer takes place predominantly from Trp 126 to Trp 158, and (iii) only Trp-158 undergoes a heavy atom perturbation, which affects selectively the z-sublevel (z is an out-of-plane axis of the indole plane) as a result of CH₃HgI binding to nearby Cys 97. We suggest that the Hg atom is located on the z-axis of Trp 158 in the complex. This interpretation is based on our investigations on the effect of orientation of heavy atom perturbers in some naphthalene-crown ether metal ion complexes.     

Non-enzymatic modifications of proteins under high-pressure treatment

High-pressure treatment, e.g. used as an alternative method for food preservation, affects protein cross-linking and glycation reactions. These reactions were monitored by using mainly milk proteins in the absence and presence of different saccharides or dicarbonyl compounds. Without carbohydrates, protein cross-linking of casein is enhanced by pressure through the formation of dehydroalanine-derived lysinoalanine. A similar effect can be observed in wool, where pressure accelerates the formation of lanthionine. In contrast, saccharide or dicarbonyl compound-induced cross-linking is constrained by high pressures. Despite this, pressure is able to accelerate the degradation of sugar or carbonyl compounds, as could be seen by the measurement of their residual contents in the examined test preparations.     

Photoinduced electron transfer between hen egg white lysozyme and anticancer drug menadione

The protein, hen egg white lysozyme, on photoexcitation undergoes electron transfer with menadione (2-methyl-1,4-naphthoquinone), a widely known anticancer drug. With the addition of menadione the fluorescence of lysozyme is quenched with the simultaneous formation of an excited state charge-transfer complex in the longer wavelength and a ground state complex. The former is further evident from laser flash photolysis studies, which indicate a tryptophan to menadione electron transfer. From fluorescence quenching studies the binding constant is found to be ∼1.7×10⁴ M⁻¹ with the corresponding changes in enthalpy (ΔH°) and entropy (ΔS°) as 12.24 kJ mol⁻¹ and 124.12 J mol⁻¹ K⁻¹, respectively, indicative of an entropy-driven process. The circular dichroism studies also show some structural changes with increase in α-helical content in the protein on interaction with menadione. Finally, docking studies give some insight into the role of Trp 108 of lysozyme in the interaction.